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A blog is a message in a bottle, both in purpose and likely leardship. --Robert Breault


SLURM

Slurm commands and Management

5 min read   ·   2025

oxDNA Simulatiion Guide

A simple step by step guide to simulation oxDNA with different relaxation technique.

9 min read   ·   2025

Linux system setup

Code to setup complete linux system from scratch.

5 min read   ·   2025

All atom MD simulation of DNA with small molecule

A description on how to simulate DNA duplex with small molecules covalently attached at different positions

1 min read   ·   2024

ZSH terminal

Ram up the terminal.

1 min read   ·   2024

ZSH initial setup

A short description on how to share mouse and keyboard using Barrier open source software.

1 min read   ·   2024

Mouse and Keyboard share

A short description on how to share mouse and keyboard using Barrier open source software.

1 min read   ·   2024

ARM Linux Server

ARM Linux Server

3 min read   ·   2024

Docker Commands

Docker commands

1 min read   ·   2024

C++ Tips

C++ Tips

1 min read   ·   2024

oxDNA Forcefield Development

Developing a custom forcefield in oxDNA

1 min read   ·   2024

GNUplot commands

GNUplot useful commands

1 min read   ·   2024

Software Installation and Environment Setup

Software Installation and Environment Setup

1 min read   ·   2024

Useful vim commands and shortcuts

Useful vim commands and shortcuts

2 min read   ·   2024

Bash automation

Automation using bash scripts, the most powerful tool in linux.

6 min read   ·   2024

Windows Fix

Simple Macbook fixes which are game changing

1 min read   ·   2024

Macbook Fixes

Simple Macbook fixes which are game changing

1 min read   ·   2024

Optimization of a molecular structure using DFT calculations

Optimization of a molecular structure using DFT calculations

2 min read   ·   2024

Speech to text conversion

Speech

2 min read   ·   2024

Pacman

All atoms simulation tutorial for DNA

1 min read   ·   2024

All atoms simulation for DNA

All atoms simulation tutorial for DNA

2 min read   ·   2024

Useful bash commands and functions

Useful bashrc commands that I require to write every time I create a new system.

5 min read   ·   2024

Cryosparc management

Installation and management of Cryosparc

2 min read   ·   2024

Disk Management

Useful disk management commands

2 min read   ·   2024

Linux User Management

Linux User Management

1 min read   ·   2024

LVM management

Handling LVM partitions

1 min read   ·   2024

BTRFS

Handling BTRFS

1 min read   ·   2024

Compiling tensorflow natively

Compiling tensorflow natively for better performance and avx support.

2 min read   ·   2023