PhD Candidate, Computational Biophysics
I'm Subhajit Roy, a computational biophysicist at Petr Šulc's Lab, Department of Physics, Arizona State University building simulation engines, ML models, and design tools for DNA & RNA nanotechnology.
What I work on
Machine learning, molecular simulation, and the infrastructure that connects computation back to the bench.
Generative models, transformers, and LLM agents for structure generation, grading, and scientific retrieval.
Coarse-grained and all-atom modeling of DNA/RNA self-assembly, from force fields to million-particle GPU simulation.
HPC clusters, simulation pipelines, and the experimental validation that closes the loop with wet-lab results.
Tools & platforms
From a coarse-grained simulation engine to LLM agents that design DNA origami, these are the systems behind the research.
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Years in research
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Publications
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Tools & platforms built
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Students served by PhysicsGrader
Selected work
Roy, S., Sikand, N., Sample, M., Evans, J., Haggenmueller, S., Kikla, A., Matthies, M., Šulc, P.